HOME > Profile > NAKATA, Ayako
- Address
- 305-0044 1-1 Namiki Tsukuba Ibaraki JAPAN [Access]
Research
- Keywords
Quantum chemistry, First-principles calculation, Large-scale DFT simulation
PublicationsNIMS affiliated publications since 2004.
Research papers
- Kang Xia, Takafumi Yatabe, Kentaro Yonesato, Soichi Kikkawa, Seiji Yamazoe, Ayako Nakata, Ryo Ishikawa, Naoya Shibata, Yuichi Ikuhara, Kazuya Yamaguchi, Kosuke Suzuki. Ultra-stable and highly reactive colloidal gold nanoparticle catalysts protected using multi-dentate metal oxide nanoclusters. Nature Communications. 15 [1] (2024) 851 10.1038/s41467-024-45066-9 Open Access
- Saeko Yamaguchi, Peidong Hu, Hanlong Ya, Peipei Xiao, Ayako Nakata, Tsuyoshi Miyazaki, Yoshitada Morikawa, Junko N. Kondo, Kotaro Tange, Kenichi Tonokura, Masanori Takemoto, Yasuo Yonezawa, Toshiyuki Yokoi, Kenta Iyoki, Tatsuya Okubo, Toru Wakihara. Adsorption behavior of low-concentration nitrous oxide on natural mordenite zeolite. Microporous and Mesoporous Materials. 388 (2025) 113550 10.1016/j.micromeso.2025.113550
- 大西 未優, 大野 彰太, 中田 彩子, 中井 浩巳. Wulffの定理と第一原理計算を用いた金属クラスターの構造予測. Journal of Computer Chemistry, Japan. 23 [3] (2024) 59-61 10.2477/jccj.2024-0023 Open Access
Books
- MIYAZAKI, Tsuyoshi, NAKATA, Ayako, ボウラー デービット. Large-Scale First-Principles Calculation Technique for Nanoarchitectonics: Local orbital and linear-scaling DFT methods with the CONQUEST code. System-Materials Nanoarchitectonics (Springer Nature). Springer, 2022, 15.
- NAKATA, Ayako, 森川 良忠. Density Functional Theory Calculations for Materials with Complex Structures. Hyperordered Structures in Materials. Springer Singapore, 2023, 30.
- HILL, Jonathan, PAYNE, Daniel Tony, SUN, Kewei, MATSUSHITA, Yoshitaka, NAKATA, Ayako, MISHRA Puneet, UCHIHASHI, Takashi, NAKANISHI, Waka, ARIGA, Katsuhiko, NAKAYAMA, Tomonobu, KAWAI, Shigeki. On-surface translational activity of porphyrin chromophore molecules. Single Molecule Mechanics on a Surface. Springer, 2022, 21.
Presentations
- NAKATA, Ayako, ボウラー デービット ロバート, MIYAZAKI, Tsuyoshi. Efficient analysis of local properties in large systems by large-scale DFT and statistical methods. Pacifichem 2025. 2025
- NAKATA, Ayako, LI, Shengzhou, MIYAZAKI, Tsuyoshi. Electronic structure analysis of size and site dependences in Pt nanoparticles by Large-scale DFT. Pacifichem 2025. 2025
- MIYAZAKI, Tsuyoshi, ボウラー デービット ロバート, NAKATA, Ayako, Lionel Truflandier. Recent development and applications of the large-scale and linear-scaling DFT code CONQUEST. PSI-K CONFERENCE 2025. 2025
Misc
- 中田 彩子, 宮崎 剛, 鷹野 優, 森川良忠. 超秩序構造の理論計算による解明へ向けて ─第一原理計算や分子動力学,機械学習による解析─. CERAMICS JAPAN. 58 [8] (2023) 522-526
Society memberships
理論化学会, 日本化学会, 日本物理学会, 分子科学会
Research Center for Materials Nanoarchitectonics (MANA)
Development and applications of large-scale DFT calculation
Density functional theory (DFT), large-scale calculation, electronic structure calculation, metallic nanoparticles
Overview
First-principles density functional theory (DFT) calculations of atomic and electronic structures are widely used to analyze and predict the properties of various materials, including organic materials, semiconductors, and metals, being a powerful tool for the development of novel materials. To accurately describe complex materials under realistic environment, calculations at the nanoscale are essential. In this research, we develop and implement new, highly efficient and accurate computational methods based on CONQUEST, a large-scale DFT code developed by our group, in order to extend DFT calculations to nanoscale materials. Using these methods, we aim to perform realistic nanoscale simulations of materials and explore their applications to practical material systems.
Novelty and originality
● Development of accurate and efficient large-scale first-principles DFT calculation methods
● Development of efficient analysis method for large-scale DFT calculations
● Application of large-scale DFT on complex materials (nanoscale surface, interface and non-periodic systems, etc.)
● Application for nanoscale practical materials such as metallic nanoparticle catalysts
Details


By introducing a new basis-function contraction scheme, the multisite method, we have successfully reduced the computational cost of first-principles calculations without losing their accuracy. This method enables large-scale first-principles calculations of systems containing several thousand atoms or more for a wide range of materials, including metals, semiconductors, and insulators (upper left figure).
Using this approach, we are investigating, for example, the structures, electronic properties, and reactivity of metal nanoparticle catalysts with sizes of several nanometers, comparable to those used in practical applications (upper right figure). Since large-scale calculations generate highly complex data, we use statistical analysis and machine learning to efficiently identify characteristic sites and features within large systems. For example, statistical analysis of large-scale DFT results has enabled us to objectively and quantitatively elucidate the effects of supports and support defects on the electronic structures of nanoparticles (lower figure).
Through this approach, we aim to achieve accurate and efficient theoretical analysis of materials at the nanoscale.
Summary
● Development of computational methods for reducing the cost and improving the accuracy of large-scale DFT calculations
● Development of efficient methods for analyzing the atomic and electronic structures of large-scale systems obtained from large-scale DFT calculations
● Application to the analysis of atomic and electronic structures at complex surfaces and interfaces in nanoscale materials

